Evaluation of gastric microbiome and metagenomic function in patients with intestinal metaplasia using 16S rRNA gene sequencing

Visibility: Public
Publication: Evaluation of gastric microbiome and metagenomic function in patients with intestinal metaplasia using 16S rRNA gene sequencing Link
Journal: Helicobacter
Source: NA
Sample Number: 97

Samples in this project
  

SampleID Type Habitat Year Sequence type MNS1 MAS2
S_SRP109017.SRR5675835 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675834 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675833 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675832 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675831 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675830 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675829 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675828 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675827 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675826 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675825 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675824 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675823 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675822 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675821 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675820 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675819 Other_humanbodysite Stomach 2016 16S V3-V4 - -
S_SRP109017.SRR5675818 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675817 Other_humanbodysite Stomach 2015 16S V3-V4 - -
S_SRP109017.SRR5675816 Other_humanbodysite Stomach 2016 16S V3-V4 - -

1MNS (Microbiome Novelty Score): < 0.12: Non-novel; 0.12-0.2: Novel; > 0.2: Very novel; -: NA for samples before 2010

2MAS (Microbiome Attention Score): < 10: Low-attention; ≥ 10: High-attention; -: NA for samples before 2010